Changes since 1.1.3 (2018-07-01).
This release contains a significant improvement in the accuracy of projecting variants in the vicinity of genome-transcript alignment gaps. Previously, hgvs handled only a limited number of cases. The new AlignmentMapper now handles all cases identified for projecting substitution, insertion, and deletion variants in the context of substituion, insertion, and deletion alignment discrepancies. [Credit: Meng Wang]
Deprecations and Removals¶
AlignmentMapper replaces IntervalMapper and TranscriptMapper. The latter are now deprecated and will be removed in the next release.