1.5.0 (2020-03-16)

Changes since 1.4.0 (2020-01-26).

Special Attention

  • Closes #552: Python 2.7 is no longer supported [cf3b95b] (Reece Hart)

New Features

  • Closes #437: Optionally allow out-of-bounds transcript variation (#590) [c66b7d4] (Reece Hart)

An new optional flag, strict_bounds, enables allows hgvs to manipulate variants that are extrapolated beyond the transcript bounds. When projecting out-of-bounds variation from the genome to the transcript, the normalized representation from the genome is preserved. Sponsored by Invitae.

Other Changes

  • Closes #570: Set search path only when necessary [914a4b4] (Clayton Wheeler)
  • Remove Biopython dependency (#527) [b30f963] (Alan Rubin)
  • Update setup.py (#575) [5424f19] (Jake Peacock)
  • removed enum34 dependency [852186e] (Reece Hart)
  • updated AssemblyMapper documentation [0beb504] (Reece Hart)

Internal and Developer Changes

  • Extensive changes in tox, pytest, and travis configurations